{ "_id": "6a197df9acfb0bcc41df74b2", "Package": "CaPO4Sim", "Type": "Package", "Title": "A Virtual Patient Simulator in the Context of Calcium and\nPhosphate Homeostasis", "Version": "0.2.1", "Authors@R": "c(\nperson(\"David\", \"Granjon\", role = c(\"aut\", \"cre\", \"cph\"), email = \"dgranjon@ymail.com\"),\nperson(\"Diane\", \"de Zélicourt\", role = \"cph\"),\nperson(\"Vartan\", \"Kurtcuoglu\", role = \"cph\"),\nperson(\"Olivier\", \"Bonny\", role = \"cph\"),\nperson(\"François\", \"Verrey\", role = \"cph\"),\nperson(family = \"University of Lausanne\", role = \"fnd\"),\nperson(family = \"University of Zurich\", role = \"fnd\"),\nperson(family = \"Kidney NCCR.CH\", role = \"fnd\"),\nperson(family = \"The Interface Group\", role = \"cph\", comment = \"Hosting Group\"),\nperson(family = \"RinteRface\", role = \"cph\", comment = \"R/HTML Templates\")\n)", "Maintainer": "David Granjon ", "Description": "Explore calcium (Ca) and phosphate (Pi) homeostasis with\ntwo novel 'Shiny' apps, building upon on a previously published\nmathematical model written in C, to ensure efficient\ncomputations. The underlying model is accessible here\n. The first\napplication explores the fundamentals of Ca-Pi homeostasis,\nwhile the second provides interactive case studies for in-depth\nexploration of the topic, thereby seeking to foster student\nengagement and an integrative understanding of Ca-Pi\nregulation.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nzlib1g-dev", "Repository": "https://cynkra.r-universe.dev", "Date/Publication": "2025-01-26 23:22:26 UTC", "RemoteUrl": "https://github.com/DivadNojnarg/CaPO4Sim", "RemoteRef": "HEAD", "RemoteSha": "1ed292a4bb7cbbb283f2844ed793d22f16dc66a8", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 10:49:55 UTC", "User": "root" }, "Author": "David Granjon [aut, cre, cph],\nDiane de Zélicourt [cph],\nVartan Kurtcuoglu [cph],\nOlivier Bonny [cph],\nFrançois Verrey [cph],\nUniversity of Lausanne [fnd],\nUniversity of Zurich [fnd],\nKidney NCCR.CH [fnd],\nThe Interface Group [cph] (Hosting Group),\nRinteRface [cph] (R/HTML Templates)", "MD5sum": "d72b8aacda349f8a87659b0c432ab6ab", "_user": "cynkra", "_type": "src", "_file": "CaPO4Sim_0.2.1.tar.gz", "_fileid": "f74b2045099c01efe1a08d7ee4b590dc2bfa21083057deb7acc938f6f6928daa", "_filesize": 3058462, "_sha256": "f74b2045099c01efe1a08d7ee4b590dc2bfa21083057deb7acc938f6f6928daa", "_created": "2026-05-29T10:49:55.000Z", "_published": "2026-05-29T11:52:25.878Z", "_distro": "noble", "_jobs": [ { "job": 78486406025, "time": 142, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7288983574" }, { "job": 78486406052, "time": 136, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7288982223" }, { "job": 78486406024, "time": 89, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7289971616" }, { "job": 78486406027, "time": 98, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7289995263" }, { "job": 78485904750, "time": 214, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7288942431" }, { "job": 78486405957, "time": 131, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7288980304" }, { "job": 78486406040, "time": 107, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7288973992" }, { "job": 78486406032, "time": 104, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7288972691" }, { "job": 78486406007, "time": 106, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7288973188" } ], "_buildurl": "https://github.com/r-universe/cynkra/actions/runs/26632886029", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/DivadNojnarg/CaPO4Sim", "_commit": { "id": "1ed292a4bb7cbbb283f2844ed793d22f16dc66a8", "author": "DivadNojnarg ", "committer": "DivadNojnarg ", "message": "dropNulls\n", "time": 1737933746 }, "_maintainer": { "name": "David Granjon", "email": "dgranjon@ymail.com", "login": "divadnojnarg", "linkedin": "in/david-granjon-88625968", "description": "PhD,\nSenior Expert Data Science @cynkra \n\nRShiny advocate, RinteRface creator\n\ndavid.granjon@novartis.com", "uuid": 18291543 }, "_registered": true, "_dependencies": [ { "package": "shiny", "role": "Imports" }, { "package": "shinyjs", "role": "Imports" }, { "package": "shinyWidgets", "role": "Imports" }, { "package": "shinyjqui", "role": "Imports" }, { "package": "plotly", "role": "Imports" }, { "package": "rintrojs", "role": "Imports" }, { "package": "shinycssloaders", "role": "Imports" }, { "package": "visNetwork", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "DT", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "htmltools", "role": "Suggests" }, { "package": "shinydashboard", "role": "Suggests" }, { "package": "shinydashboardPlus", "role": "Suggests" } ], "_owner": "divadnojnarg", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 46, "_contributors": [ { "user": "divadnojnarg", "count": 397, "uuid": 18291543 }, { "user": "ddezel", "count": 15, "uuid": 32384139 } ], "_userbio": { "uuid": 38209788, "type": "organization", "name": "cynkra", "description": "We support your business and the people behind it by helping you pick the right tools, implementing and supporting solutions, training and code review." }, "_downloads": { "count": 261, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CaPO4Sim" }, "_devurl": "https://github.com/divadnojnarg/capo4sim", "_searchresults": 14, "_metadata": { "category": "Shiny", "cynkra_team_members": "david" }, "_rbuild": "4.6.0", "_assets": [ "extra/CaPO4Sim.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/divadnojnarg/capo4sim", "_realowner": "divadnojnarg", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2019-04-11" }, { "version": "0.2.0", "date": "2021-03-21" }, { "version": "0.2.1", "date": "2024-08-18" } ], "_exports": [ "%>%", "arrow_lighting", "diseaseSelect", "diseaseSelectUi", "extract_running_sim", "fullScreen", "fullScreenUI", "generate_edges", "generate_network", "generate_nodes", "generate_notification", "generate_userFields", "glossaryCaPO4", "glossaryCaPO4Ui", "helpCaPO4", "helpCaPO4Ui", "infos", "infosUi", "is_empty", "make_plot_hypoD3", "make_plot_hypopara", "make_plot_php1", "myCarousel", "networkCaPO4", "networkCaPO4Ui", "networkOptions", "networkOptionsUi", "plotBox", "plotBoxUi", "run_CaPO4Sim", "skinSelect", "skinSelectUi", "userInfo", "userInfoUi", "video", "videoUi" ], "_help": [ { "page": "arrow_lighting", "title": "Highlight arrows for steady state events", "topics": [ "arrow_lighting" ] }, { "page": "CaPO4Sim", "title": "CaPO4Sim", "topics": [ "CaPO4Sim-package", "CaPO4Sim" ] }, { "page": "diseaseCheckBox", "title": "Create a checkbox for diseaseSelectUi", "topics": [ "diseaseCheckBox" ] }, { "page": "diseaseSelect", "title": "Create a disease selector server logic", "topics": [ "diseaseSelect" ] }, { "page": "diseaseSelectUi", "title": "Create a disease selector UI module", "topics": [ "diseaseSelectUi" ] }, { "page": "extract_running_sim", "title": "Extract the current running simulation", "topics": [ "extract_running_sim" ] }, { "page": "fullScreen", "title": "Create a fullScreen server logic", "topics": [ "fullScreen" ] }, { "page": "fullScreenUI", "title": "Create a fullScreen UI module", "topics": [ "fullScreenUI" ] }, { "page": "generate_edges", "title": "CaPO4 Edges Generator", "topics": [ "generate_edges" ] }, { "page": "generate_network", "title": "CaPO4 Network Generator", "topics": [ "generate_network" ] }, { "page": "generate_nodes", "title": "CaPO4 Nodes Generator", "topics": [ "generate_nodes" ] }, { "page": "generate_notification", "title": "Notifications Generator for CaPO4 animations", "topics": [ "generate_notification" ] }, { "page": "generate_userFields", "title": "Generate user fields", "topics": [ "generate_userFields" ] }, { "page": "glossaryCaPO4", "title": "CaPO4 glossary server module", "topics": [ "glossaryCaPO4" ] }, { "page": "glossaryCaPO4Ui", "title": "CaPO4 glossary UI module", "topics": [ "glossaryCaPO4Ui" ] }, { "page": "helpCaPO4", "title": "Help server module", "topics": [ "helpCaPO4" ] }, { "page": "helpCaPO4Ui", "title": "Help UI module", "topics": [ "helpCaPO4Ui" ] }, { "page": "infos", "title": "Info server module", "topics": [ "infos" ] }, { "page": "infosUi", "title": "Info UI module", "topics": [ "infosUi" ] }, { "page": "infoSwitch", "title": "Create a switch input for infosUi", "topics": [ "infoSwitch" ] }, { "page": "make_plot_hypoD3", "title": "Produce plots related to vitamin D3 deficiency (hypoD3)", "topics": [ "make_plot_hypoD3" ] }, { "page": "make_plot_hypopara", "title": "Produce plots related to hypoparathyroidism (hypopara)", "topics": [ "make_plot_hypopara" ] }, { "page": "make_plot_php1", "title": "Produce plots related to primary hyperparathyroidism (php1)", "topics": [ "make_plot_php1" ] }, { "page": "myCarousel", "title": "carousel container", "topics": [ "myCarousel" ] }, { "page": "networkCaPO4", "title": "CaPO4 Network server module", "topics": [ "networkCaPO4" ] }, { "page": "networkCaPO4Ui", "title": "CaPO4 Network UI module", "topics": [ "networkCaPO4Ui" ] }, { "page": "networkOptions", "title": "CaPO4 Network Options server module", "topics": [ "networkOptions" ] }, { "page": "networkOptionsUi", "title": "CaPO4 Network Options UI module", "topics": [ "networkOptionsUi" ] }, { "page": "plotBox", "title": "plot box server module", "topics": [ "plotBox" ] }, { "page": "plotBoxUi", "title": "plot box UI module", "topics": [ "plotBoxUi" ] }, { "page": "run_CaPO4Sim", "title": "Launch the virtual patient simulator", "topics": [ "run_CaPO4Sim" ] }, { "page": "skinSelect", "title": "Dashboard skin selector, server side", "topics": [ "skinSelect" ] }, { "page": "skinSelectUi", "title": "Dashboard skin selector, ui side", "topics": [ "skinSelectUi" ] }, { "page": "userInfo", "title": "CaPO4 user info server module", "topics": [ "userInfo" ] }, { "page": "userInfoUi", "title": "CaPO4 user info UI module", "topics": [ "userInfoUi" ] }, { "page": "video", "title": "Create a video server logic", "topics": [ "video" ] }, { "page": "videoUi", "title": "Create a movie UI module", "topics": [ "videoUi" ] } ], "_readme": "https://github.com/DivadNojnarg/CaPO4Sim/raw/HEAD/README.md", "_rundeps": [ "askpass", "base64enc", "bslib", "cachem", "cli", "commonmark", "cpp11", "crosstalk", "curl", "data.table", "digest", "dplyr", "DT", "evaluate", "farver", "fastmap", "fontawesome", "fs", "generics", "ggplot2", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httpuv", "httr", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "later", "lazyeval", "lifecycle", "magrittr", "memoise", "mime", "openssl", "otel", "pillar", "pkgconfig", "plotly", "promises", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "rintrojs", "rlang", "rmarkdown", "S7", "sass", "scales", "shiny", "shinycssloaders", "shinyjqui", "shinyjs", "shinyWidgets", "sourcetools", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "visNetwork", "withr", "xfun", "xtable", "yaml" ], "_score": 4.507855871695831, "_indexed": false, "_nocasepkg": "capo4sim", "_universes": [ "cynkra" ], "_indexurl": "https://divadnojnarg.r-universe.dev/CaPO4Sim", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.1", "date": "2026-05-29T10:52:19.000Z", "distro": "noble", "commit": "1ed292a4bb7cbbb283f2844ed793d22f16dc66a8", "fileid": "176c69eaa3120c3d07ff6a6673d01f38fdbbfae1fd1a97097a14486cd22ef000", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cynkra/actions/runs/26632886029" }, { "r": "4.6.0", "os": "linux", "version": "0.2.1", "date": "2026-05-29T10:52:16.000Z", "distro": "noble", "commit": "1ed292a4bb7cbbb283f2844ed793d22f16dc66a8", "fileid": "a596fdb5fa4f370753baa71ece9f73963ab9f22fcb75832f587f8351be06e9ea", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cynkra/actions/runs/26632886029" }, { "r": "4.5.3", "os": "mac", "version": "0.2.1", "date": "2026-05-29T11:50:28.000Z", "commit": "1ed292a4bb7cbbb283f2844ed793d22f16dc66a8", "fileid": "54b0a98a86edef093dc71373fc626bf95ee30a5f6aa5ab8b0cdebf31d718063a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cynkra/actions/runs/26632886029" }, { "r": "4.6.0", "os": "mac", "version": "0.2.1", "date": "2026-05-29T11:51:50.000Z", "commit": "1ed292a4bb7cbbb283f2844ed793d22f16dc66a8", "fileid": "6a4af9e3e66bc3382cf860f4d57a5bf8ab74909c4297b89a0a9ddb3458fb1da4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cynkra/actions/runs/26632886029" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.1", "date": "2026-05-29T10:52:27.000Z", "commit": "1ed292a4bb7cbbb283f2844ed793d22f16dc66a8", "fileid": "ffbf9b7645ab20eb14363db4e3ba55ad9a9fd250e3e80f1c95d0830042acfa95", "status": "success", "buildurl": "https://github.com/r-universe/cynkra/actions/runs/26632886029" }, { "r": "4.7.0", "os": "win", "version": "0.2.1", "date": "2026-05-29T10:51:38.000Z", "commit": "1ed292a4bb7cbbb283f2844ed793d22f16dc66a8", "fileid": "de2d429dd9d2c472890b3bec72d4db07a39bca1c19f81ad50402f4497d03ef82", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cynkra/actions/runs/26632886029" }, { "r": "4.5.3", "os": "win", "version": "0.2.1", "date": "2026-05-29T10:51:28.000Z", "commit": "1ed292a4bb7cbbb283f2844ed793d22f16dc66a8", "fileid": "5c1ea590f38e678ee8fed91ea46bcd5fd6ba0ddfaa6bdea83983e1c7962fba8a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cynkra/actions/runs/26632886029" }, { "r": "4.6.0", "os": "win", "version": "0.2.1", "date": "2026-05-29T10:51:34.000Z", "commit": "1ed292a4bb7cbbb283f2844ed793d22f16dc66a8", "fileid": "a3f1188c6ff1c8ad06c752043fce9660ec862ca51f8af9efdfc36f20db8795ff", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cynkra/actions/runs/26632886029" } ] }